Index

A

AAOrder (class in gorder.analysis_types) Analysis (class in gorder) AnalysisError AnalysisResults (class in gorder.results) APIError atom() (gorder.results.AtomResults method)

AtomResults (class in gorder.results) atoms() (gorder.results.BondResults method) (gorder.results.MoleculeResults method) average_order() (gorder.results.AnalysisResults method) (gorder.results.MoleculeResults method) average_ordermaps() (gorder.results.AnalysisResults method) (gorder.results.MoleculeResults method)

B

BondResults (class in gorder.results)

bonds() (gorder.results.AtomResults method) (gorder.results.MoleculeResults method)

C

CGOrder (class in gorder.analysis_types) ClusteringClassification (class in gorder.leaflets) ConfigError

Convergence (class in gorder.results) convergence() (gorder.results.MoleculeResults method) Cuboid (class in gorder.geometry) Cylinder (class in gorder.geometry)

D

DynamicNormal (class in gorder.membrane_normal)

E

error() (gorder.results.Order method)

EstimateError (class in gorder.estimate_error) extract() (gorder.results.Map method)

F

frames() (gorder.results.Convergence method) (gorder.results.LeafletsData method)

from_file() (gorder.Analysis static method)

G

get_at() (gorder.results.Map method) get_atom() (gorder.results.MoleculeResults method) get_bond() (gorder.results.AtomResults method) (gorder.results.MoleculeResults method) get_molecule() (gorder.results.AnalysisResults method) (gorder.results.LeafletsData method) GlobalClassification (class in gorder.leaflets) gorder module gorder.analysis_types module gorder.estimate_error module

gorder.exceptions module gorder.geometry module gorder.leaflets module gorder.membrane_normal module gorder.ordermap module gorder.results module

I

IndividualClassification (class in gorder.leaflets)

L

leaflets_data() (gorder.results.AnalysisResults method) LeafletsData (class in gorder.results) LocalClassification (class in gorder.leaflets)

lower() (gorder.results.Convergence method) (gorder.results.OrderCollection method) (gorder.results.OrderMapsCollection method)

M

ManualClassification (class in gorder.leaflets) Map (class in gorder.results) module gorder gorder.analysis_types gorder.estimate_error gorder.exceptions gorder.geometry gorder.leaflets gorder.membrane_normal gorder.ordermap gorder.results

molecule() (gorder.results.AtomResults method) (gorder.results.BondResults method) (gorder.results.MoleculeResults method) MoleculeResults (class in gorder.results) molecules() (gorder.results.AnalysisResults method)

N

n_analyzed_frames() (gorder.results.AnalysisResults method)

NdxClassification (class in gorder.leaflets) normals_data() (gorder.results.AnalysisResults method)

O

Order (class in gorder.results) order() (gorder.results.AtomResults method) (gorder.results.BondResults method) OrderCollection (class in gorder.results)

OrderMap (class in gorder.ordermap) ordermaps() (gorder.results.AtomResults method) (gorder.results.BondResults method) OrderMapsCollection (class in gorder.results)

R

run() (gorder.Analysis method)

S

span_x() (gorder.results.Map method)

span_y() (gorder.results.Map method) Sphere (class in gorder.geometry)

T

tile_dim() (gorder.results.Map method) total() (gorder.results.Convergence method) (gorder.results.OrderCollection method) (gorder.results.OrderMapsCollection method)

U

UAOrder (class in gorder.analysis_types) upper() (gorder.results.Convergence method) (gorder.results.OrderCollection method) (gorder.results.OrderMapsCollection method)

V

value() (gorder.results.Order method)

W

write() (gorder.results.AnalysisResults method)

WriteError